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Publications

Publications

2025

  • Missaghi O, Nehri LN, Bakhshi S, Karaosmanoğlu O, Sivas H, Acar AC, Banerjee S. Using mathematical approaches to answer complex biological questions: can exosomal miRnas predict cancer prognosis? Tissue Barriers. 2025 Dec 31:2611205. doi: 10.1080/21688370.2025.2611205
  • Cemre Alemdar, Dilara Gundogdu, Ayse Karauzum, Cagri Turan, Esin Gülce Seza, Nülüfer Tülün Güray, Sreeparna Banerjee, Irem Erel-Goktepe, Poly(2-oxazoline) based polymersomes and their hollow multilayer capsules as nano- and micro-reactors for enzymatic reactions, European Polymer Journal, Volume 238,
    2025, 11417
  • GÜNDOĞDU D., Alemdar C., SEZA E. G., GÜRAY N. T., BANERJEE S., EREL GÖKTEPE İ. Stimuli responsive hollow layer-by-layer microcapsules for enzymatic cascade reactions. European Polymer Journal , vol.236, 2025.
  • Demirkol Canlı S*, Güner G, Işık A, Sosic-Jurjevi B, Rom AD, Seza EG, Dizdar Ö, Dragicevic S, Nikolic A, Akyol A, Banerjee S*. AKR1B1 Expression in the Colorectal Tumor Microenvironment Contributes Towards Its Prognostic Significance. Cancer Med. 2025 May;14(10):e70974.
  • Torun A, Tuğral H, Banerjee S*. Crosstalk Between Phase-Separated Membraneless Condensates and Membrane-Bound Organelles in Cellular Function and Disease. Adv Exp Med Biol. 2025; 1483:141-169.
  • Uzun, M. B., Guderer, S., Banerjee, S., & Yilmaz, A. Synthesis and photoluminescence properties of Ce3+/Tb3+ and Eu3+ ions doped GdB3O6/Ca10(PO4)6(OH)2 Core/Shell particles as well as its cytotoxicity against colon cancer cells. Journal of Molecular Structure, 2025, vol.1321.
  • Menemenli NŞ, Özcan Ö, Hüsnügil HH, Güleç Taşkıran AE, Oral G, Akyol A, Banerjee S*. The Chorioallantoic Membrane (CAM) Assay for the Analysis of Starvation-Induced Autophagy. Methods Mol Biol. 2025 doi: 10.1007/7651_2024_562. 

2024

  • Aliye Ezgi Güleç Taşkıran, Hepşen H Hüsnügil, Zahra E Soltani, Göksu Oral, Nazlı S Menemenli, Chuanpit Hampel, Kerstin Huebner, Katharina Erlenbach-Wuensch, Ilir Sheraj, Regine Schneider-Stock, Aytekin Akyol, Nalan Liv, Sreeparna Banerjee*. Post-Transcriptional Regulation of Rab7a in Lysosomal Positioning and Drug Resistance in Nutrient-Limited Cancer Cells. Traffic, 2024 Sep;25(9):e12956. doi: 10.1111/tra.12956.
  • Esma Ugur, Gökçe Tidim, Dilara Gundogdu, Cemre Alemdar, Goksu Oral, H Hazal Husnugil, Sreeparna Banerjee, Irem Erel-Goktepe. Effect of Periodate-Induced Cross-linking on Dual Anticancer Drug Release from Poly(2-isopropyl-2-oxazoline)/Tannic Acid-Based Layer-by-Layer Microparticles. ACS Omega. 2024 Sep 11;9(38):39626-39642. doi: 10.1021/acsomega.4c03977.
  • Güleç Taşkıran AE, Karaoğlu DA, Eylem CC, Ermiş Ç, Güderer İ, Nemutlu E, Demirkol Canlı S, Banerjee S*. Glutamine withdrawal leads to the preferential activation of lipid metabolism in metastatic colorectal cancer. Transl Oncol. 2024 Oct;48:102078. doi: 10.1016/j.tranon.2024.102078.
  • Pastorino G. A., Sheraj I., Huebner K., Ferrero G., Kunze P., Hartmann A., Hampel C., Hüsnügil H. H., Maiuthed A., Gebhart F., Schlattmann F., Gulec Taskiran A. E., Oral G., Palmisano R., Pardini B., Naccarati A., Erlenbach-Wuensch K., Banerjee S., Schneider-Stock R. A partial epithelial-mesenchymal transition signature for highly aggressive colorectal cancer cells that survive under nutrient restriction. Journal of Pathology, 262, 347-361, 2024
  • Hüsnügil H. H., Güleç Taşkıran A. E., Güderer İ., Nehri L. N., Oral G., Menemenli N. Ş., Özcan Ö., Noghreh A., Akyol A.,  Banerjee S*. Lysosomal alkalinization in nutrient restricted cancer cells activates cytoskeletal rearrangement to enhance partial epithelial to mesenchymal transition. Translational Oncology, 41, 2024.

2023

  • Gündoğdu D., Alemdar C., Turan C., Husnugil H. H., Banerjee S., Erel Göktepe İ. Tuning stimuli-responsive properties of alginate hydrogels through layer-by-layer functionalization for dual-responsive dual drug release. Colloids and Surfaces A: Physicochemical and Engineering Aspects, 676, 2023
  • Atre R., Sharma R., Vadim G., Solanki K., Wadhonkar K., Singh N., Patidar P., Khabiya R., Samaur H., Banerjee S*., Baig M. S*. The indispensability of macrophage adaptor proteins in chronic inflammatory diseases. International Immunopharmacology, 119, 2023

2022

  • Huebner K., Erlenbach-Wuensch K., Prochazka J., Sheraj I., Hampel C., Mrazkova B., et al.  ATF2 loss promotes tumor invasion in colorectal cancer cells via upregulation of cancer driver TROP2. Cellular and Molecular Life Sciences, 79, 8, 2022
  • Ulusan S., Sheraj I., Stehling S., Ivanov I., Das A., Kühn H., Banerjee S*. Structural and functional evaluation mammalian and plant lipoxygenases upon association with nanodics as membrane mimetics. Biophysical chemistry, 288, 06855, 2022.
  • Bocci F., Schneider-Stock R., Banerjee S*. Editorial: Epithelial to Mesenchymal Plasticity in Colorectal Cancer Frontiers in Cell and Developmental Biology, 10, 2022
  • Aydemir U., Ugur E., Ermis C., Aydemir F. N., Ozdemir E., Banerjee S., Erel-Göktepe I*. Boron Cage Triggered Micellization of a Neutral-Cationic Block Copolymer and Preparation of Boron-Containing Layer-by-Layer Microparticles. ACS Applied Polymer Materials, 2022, 4, 3448-3461.
  • Arisoy S, Kocas M, Comoglu T*, Guderer I, Banerjee S. Development of ACE2 loaded decoy liposomes and their effect on SARS-CoV-2 for Covid-19 treatment. Pharm Dev Technol. 2022 Feb 25:1-11. doi: 10.1080/10837450.2022.2042557.

2021

  • Banerjee S. Aldo Keto Reductases AKR1B1 and AKR1B10 in Cancer: Molecular Mechanisms and Signaling Networks. Adv Exp Med Biol. 2021 May 5. doi: 10.1007/5584_2021_634
  • Klionsky DJ et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) Autophagy. 2021 Jan;17(1):1-382. doi: 10.1080/15548627.2020.1797280.
  • Sheraj I, Guray NT, Banerjee S*. A pan-cancer transcriptomic study showing tumor specific alterations in central metabolism. Sci Rep. 2021 Jul 1;11(1):13637. doi: 10.1038/s41598-021-93003-3.
  • Rajpoot S, Ohishi T, Kumar A, Pan Q, Banerjee S, Zhang KYJ, Baig MS*. A Novel Therapeutic Peptide Blocks SARS-CoV-2 Spike Protein Binding with Host Cell ACE2 Receptor. Drugs R D. 2021 Sep;21(3):273-283. doi: 10.1007/s40268-021-00357-0. Epub 2021 Jul 29.

 

2020

  • Baig MS, Roy A, Rajpoot S, Liu D, Savai R, Banerjee S, Kawada M, Faisal SM, Saluja R, Saqib U, Ohishi T, Wary KK. Tumor-derived exosomes in the regulation of macrophage polarization. Inflamm Res. 2020 May;69(5):435-451. doi: 10.1007/s00011-020-01318-0.
  • Kazan HH, Urfali-Mamatoglu C, Yalcin GD, Bulut O, Sezer A, Banerjee S, Gunduz U. 15-LOX-1 has diverse roles in the resensitization of resistant cancer cell lines to doxorubicin. J Cell Physiol. 2020 May;235(5):4965-4978. doi: 10.1002/jcp.29375. Epub 2019 Oct 29.
  • Tunçer S, Sade-Memişoğlu A, Keşküş AG, Sheraj I, Güner G, Akyol A, Banerjee S. Enhanced expression of HNF4α during intestinal epithelial differentiation is involved in the activation of ER stress. FEBS J. 2020 Jun;287(12):2504-2523. doi: 10.1111/febs.15152. Epub 2019 Dec 11.
  • Mouzaoui S, Banerjee S, Djerdjouri B. Low-dose curcumin reduced TNBS-associated mucin depleted foci in mice by scavenging superoxide anion and lipid peroxides, rebalancing matrix NO synthase and aconitase activities, and recoupling mitochondria. Inflammopharmacology. 2020 Aug;28(4):949-965. doi: 10.1007/s10787-019-00684-4. Epub 2020 Jan 20.
  • Demirkol Canlı S, Seza EG, Sheraj I, Gömçeli I, Turhan N, Carberry S, Prehn JHM, Güre AO, Banerjee S. Evaluation of an aldo-keto reductase gene signature with prognostic significance in colon cancer via activation of epithelial to mesenchymal transition and the p70S6K pathway. Carcinogenesis. 2020 Sep 24;41(9):1219-1228. doi: 10.1093/carcin/bgaa072.
  • Akman P, Ulusan S, Banerjee S, Yilmaz A. Core/shell type, Ce3+ and Tb3+ doped GdBO3 system: Synthesis and Celecoxib drug delivery application. Microporous and Mesoporous Materials. 2020 Dec 1, 308, 110528. doi: 10.1016/j.micromeso.2020.110528

2019

  • Khan R, Ulusan S, Banerjee S, Dogan Ö. Synthesis, Characterization and Evaluation of Cytotoxic Activity of Novel Aziridinyl Phosphonic Acid Derivatives. Chem Biodivers. 2019 Sep 12. doi: 10.1002/cbdv.201900375
  • Torun A, Enayat S, Sheraj I, Tunçer S, Ülgen DH, Banerjee S. Butyrate mediated regulation of RNA binding proteins in the post-transcriptional regulation of inflammatory gene expression. Cell Signal. 2019 Sep 2;64:109410. doi: 10.1016/j.cellsig.2019.109410.
  • Srivastava M, Saqib U, Banerjee S, Wary K, Kizil B, Muthu K, Baig MS. Inhibition of the TIRAP-c-Jun interaction as a therapeutic strategy for AP1-mediated inflammatory responses. Int Immunopharmacol. 2019 Jun;71:188-197. doi: 10.1016/j.intimp.2019.03.031.
  • Onat B, Tuncer S, Ulusan S, Banerjee S, Erel Goktepe I. Biodegradable polymer promotes osteogenic differentiation in immortalized and primary osteoblast-like cells. Biomed Mater. 2019 Apr 29;14(4):045003. doi: 10.1088/1748-605X/ab0e92.
  • Tunçer S, Colakoglu M, Ulusan S, Ertas G, Karasu C, Banerjee S. Evaluation of colloidal platinum on cytotoxicity, oxidative stress and barrier permeability across the gut epithelium. Heliyon. 2019 Mar 21;5(3):e01336. doi: 10.1016/j.heliyon.2019.e01336.
  • Cagli, E, Ugur, E, Ulusan, S, Banerjee, S, Erel-Goktepe, I. Effect of Side Chain Variation on Surface and Biological Properties of Poly(2-alkyl-2-oxazoline) Multilayers” European Polymer Journal, 2019, DOI:10.1016/j.eurpolymj.2019.02.031
  • Saqib U, Savai R, Liu D, Banerjee S, Baig MS. Drug repositioning as an effective therapy for protease-activated receptor 2 inhibition. J Cell Biochem. 2019, 120(2), 1522-1526
  • Roy A, Banerjee S, Saqib U, Baig MS. NOS1-derived nitric oxide facilitates macrophage uptake of low-density lipoprotein. J Cell Biochem. 2019, 120(7), 11593-11603 doi: 10.1002/jcb.28439.
  • Onat B, Ulusan S, Banerjee, S, Erel-Goktepe, I. Multifunctional Layer-by-Layer Modified Chtiosan/Poly(ethylene glycol) Hydrogels, European Polymer Journal, 2019, 112, 73-86.

2018

2017

  • Taşkoparan B., Seza E.G., Demirkol S., Tunçer S., Stefek M., Gure A.O., Banerjee S. Opposing roles of the aldo-keto reductases AKR1B1 and AKR1B10 in colorectal cancer. Cellular Oncology, 2017. 40(6):563-578. DOI: 10.1007/s13402-017-0351-7
  • Tunçer S., Keşkuş A.G., Çolakoğlu, M., Çimen, I., Yener C., Konu, O., Banerjee, S. 15-Lipoxygenase-1 re-expression in colorectal cancer alters endothelial cell features through enhanced expression of TSP-1 and ICAM-1. Cellular Signalling, 2017, 39:44-54. DOI:10.1016/j.cellsig.2017.07.022
  • Tunçer S., Banerjee, S. Determination of Autophagy in the Caco-2 Spontaneously Differentiating Model of Intestinal Epithelial Cells. Methods Mol Biol. 2017. DOI: 10.1007/7651_2017_66
  • İnan Genç A, Gök S, Banerjee S , Severcan F. Valdecoxib recovers the lipid composition, order and dynamics in colon cancer cell lines independent of COX-2 expression: An ATR-FTIR spectroscopy study. Applied Spectroscopy, 2017, 71(1), 105-117. DOI:10.1177/0003702816654164

2016

  • Eren ZS, Tunçer S, Yildirim L, Banerjee S, Yilmaz, A. Improved Solubility of Celecoxib by Inclusion in SBA-15 Mesoporous Silica: Drug Loading in Different Solvents and Release. Microporous & Mesoporous Materials, 2016, 235, 211-223. DOI: 10.1016/j.micromeso.2016.08.014
  • Yilmaz B*, Evis Z, Tezcaner A, Banerjee S. Surface Characterization and Biocompatibility of Selenium-Doped Hydroxyapatite Coating on Titanium Alloy. International Journal of Applied Ceramic Technology, 2016. 13(6), 1059-1068. DOI: 10.1111/ijac.12577.
  • Tunçer S, Tunçay Çağatay S, Keskus AG, Çolakoğlu M, Konu O, Banerjee S. Interplay between 15-Lipoxygenase-1 and Metastasis Associated Antigen 1 in the metastatic potential of colorectal cancer. Cell Proliferation, 2016, 49(4):448-59. doi: 10.1111/cpr.12267
  • Onat B, Butun V, Banerjee S, Erel-Göktepe I.Bacterial anti-adhesive and pH-induced antibacterial agent releasing ultra-thin films of zwitterionic copolymer micelles. Acta Biomaterialia, 2016, 40, 293-309. DOI: 10.1016/j.actbio.2016.04.033.
  • Enayat, S, Ceyhan MS, Taskoparan B, Stefek M, Banerjee S. CHNQ, a novel 2-Chloro-1,4-naphthoquinone Derivative of Quercetin, induces Oxidative Stress and Autophagy both in vitro and in vivo. Archives of Biochemistry and Biophysics, 2016, 596:84-98. DOI: 10.1016/j.abb.2016.03.004
  • Bounaama A, Enayat S, Ceyhan MS, Moulahoum H, Djerdjouri B and Banerjee S. Ethanolic extract of bark from Salix aegyptiaca ameliorates 1,2-dimethylhydrazine induced colon carcinogenesis in mice by reducing oxidative stress. Nutrition and Cancer: An International Journal, 2016, 68, 495-506. DOI: 10.1080/01635581.2016.1152379

2015

  • Tunçer S, Banerjee S. Eicosanoid pathway in colorectal cancer: Recent updates. World J Gastroenterol 2015; 7;21(41):11748-66 DOI: 10.3748/wjg.v21.i41.0000 (Invited Review).
  • Soltesova Prnova M, Majekova M, Milackova I, Díez-Dacal B, Pérez-Sala D, Ceyhan MS, Banerjee S, Stefek M. [5-(Benzyloxy)-1H-indol-1-yl]acetic acid, an aldose reductase inhibitor and PPARγ ligand. Acta Biochim Pol. 2015, 62(3):523-8.
  • Yanuar Dwi Putra Limasale, Ayşen Tezcaner, Can Özen, Dilek Keskin, Sreeparna Banerjee. Epidermal Growth Factor Receptor-Targeted Immunoliposomes for Delivery of Celecoxib to Cancer Cells. International Journal of Pharmaceutics, 2015, 479, 364-373.
  • Milackova I, Prnova MS, Majekova M, Sotnikova R, Stasko M, Kovacikova L, Banerjee S, Veverka M, Stefek M. 2-Chloro-1,4-naphthoquinone derivative of quercetin as an inhibitor of aldose reductase and anti-inflammatory agent. J Enzyme Inhib Med Chem. 2015, 30(1), 107-13.

2014

  • Sinem Yilmaz-Ozcan; Asli Sade; Baris Kucukkaraduman; Yasemin Kaygusuz; Kerem Mert Senses; Sreeparna Banerjee; Ali Osmay Gure. Epigenetic mechanisms underlying the dynamic expression of cancer-testis genes, PAGE2, -2B and SPANX-B, during mesenchymal-to-epithelial transition. PLoS One, 2014, 9(9), e107905.
  • Enayat S and Banerjee S. The ethanolic extract of bark from Salix aegyptiaca inhibits the metastatic potential and epithelial to mesenchymal transition of colon cancer cell lines. Nutrition and Cancer: An International Journal, 2014, 66(6):999–1008.

2013

  • Erdoğ A, Limasale YD, Keskin D, Tezcaner A, Banerjee S. In vitro characterization of a liposomal formulation of celecoxib containing 1,2-Distearoyl-sn-Glycero-3-Phosphocholine (DSPC), cholesterol and polyethylene glycol (PEG) and its functional effects against colorectal cancer cell lines. Journal of Pharmaceutical Sciences. 2013, 102:3666-77.
  • Enayat S, Ceyhan MS, Basaran AA, Gursel M, Banerjee S. Anticarcinogenic effects of the ethanolic extract of Salix aegyptiaca in colon cancer cells: involvement of Akt/PKB and MAPK pathways. Nutrition and Cancer: An International Journal. 2013, 65:1045-58
  • Tunçay Çağatay S, Çimen I, Savaş B, Banerjee S. MTA-1 expression is associated with metastasis and epithelial to mesenchymal transition in colorectal cancer cells. Tumor Biology 2013, 34:1189-1204.
  • Kavas A, Tunçay Çağatay S, Banerjee S, Keskin D, Tezcaner A. Potential of raloxifene on reversing osteoarthritis-like alterations in rat chondrocytes: An in vitro model study. Journal of Biosciences, 2013 38, 1–13.

2012

  • Astarci E, Sade A, Çimen I, Savaş B and Banerjee S. The NF-κB target genes ICAM-1 and VCAM-1 are differentially regulated during spontaneous differentiation of Caco-2 cells. FEBS J. 2012, 279, 2966-86.
  • Astarci E, Erson-Bensan AE, Banerjee S. MMP16 expression is downregulated by microRNA-146a in spontaneously differentiating Caco-2 cells. Development Growth & Differentiation. 2012, 54, 216–226.
  • Sade A, Tunçay S, Çimen I, Severcan F, Banerjee S . Celecoxib reduces fluidity and decreases metastatic potential of colon cancer cell lines irrespective of COX-2 expression. Bioscience Reports 2012, 32, 35-44.

2011

  • Çimen I, Astarci, E and Banerjee S. 15-Lipoxygenase-1 exerts its tumor suppressive role by inhibiting nuclear factor-kappa B via activation of PPAR gamma. J. Cellular Biochemistry. 2011, 112, 2490-501.
  • Sade A, Banerjee S, Severcan F. Effects of the non steroidal anti-inflammatory drug celecoxib on cholesterol containing distearoyl phosphatidylcholine membranes. Spectroscopy - An international journal. 2011, 25, 177-185.

2010

  • Banerjee S and Flores-Rozas H. Monoclonal antibodies for targeted therapy in colorectal cancer. Cancer Biol Ther. 2010 Apr 4;9(8). (Review)
  • Deniz A, Sade A, Severcan F, TezcanerA, Keskin D, Banerjee S . Celecoxib Loaded Liposomes: Effect of Cholesterol on Encapsulation and in vitro Release Characteristics. Biosci Rep. 2010 Jun 3;30(5):365-73.
  • Sade, A, Banerjee, S and Severcan, F. Concentration dependent effects of celecoxib on model membranes. J Liposome Res. 2010 Jun;20(2):168-77.

2009

  • I. Çimen, S. Tunçay and Banerjee, S. 15-Lipoxygenase-1 expression suppresses the invasive properties of the colorectal carcinoma cell lines HCT-116 and HT-29. Cancer Sci, 2009 100, 2283-2291.
  • Enayat, S and Banerjee, S. Comparative antioxidant activity of extracts from leaves, bark and catkins of Salix aegyptiaca sp. Food Chemistry, 2009, 116, 23-28.
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